Timeline



2006-12-28:

23:39 DiscussionPage edited by Gary J. Ferland
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23:39 WikiStart edited by Gary J. Ferland
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23:38 DiscussionPage created by Gary J. Ferland
22:32 CloudyPapers edited by Ryan Porter
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22:31 CloudyPapers edited by Ryan Porter
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21:37 MakefileDescription created by peter
This page describes how to use GNU make to build Cloudy
21:21 WikiStart edited by peter
Add link to new Makefile description (diff)
06:22 Changeset [751] by Gary J. Ferland
punch_do.cpp - BUGFIX - hide option did not work on punResuts command …
03:39 Ticket #9 (failed sanity check in ion_trim) created by Ryan Porter
The attached model blows the ASSERT at line 404 of ion_trim.cpp for …

2006-12-26:

20:16 Ticket #7 (N ionization in first zone very different after extending into ...) closed by anonymous
fixed: fixed in R750 by resetting mole charge transfer array at start of each …
20:12 Changeset [750] by Gary J. Ferland
cddrive.cpp - fix print formation when line not found ion_nitro.cpp - …
19:51 Ticket #8 (comp4 in trsuite programs crashes with memory access violation) created by anonymous
comp4 in tsuite / programs crashes on second sim due to memory access …
19:45 Ticket #7 (N ionization in first zone very different after extending into ...) created by Gary J. Ferland
the N0 fraction in the first zone of this sim changes dramatically - …
17:40 Changeset [749] by Gary J. Ferland
tsuite - fix formatting of some sims in slow tsuite suite programs …

2006-12-24:

18:37 Changeset [748] by Gary J. Ferland
helike_cs.cpp - comment out open mp call parse_print.cpp - print size …

2006-12-23:

17:15 Changeset [747] by rjrw
Merged from trunk r738:746
16:49 Changeset [746] by rjrw
Added silly comment. The bug in pdr_leiden_f1.in referred to below …
16:45 Changeset [745] by rjrw
Convert further expressions to constants in data file.

2006-12-22:

23:39 Changeset [744] by Ryan Porter
The call to CO_zero at line 85 of optimize_func.cpp breaks the code. …
20:05 Changeset [743] by Ryan Porter
Fix in iso_continuum_lower when lowering changes during calculation. …
15:45 Changeset [742] by rjrw
Avoid multiple allocations of molecular solver space when optimizing.
03:48 Ticket #1 (crash due to intense continuum) closed by Ryan Porter
fixed: I don't think there is a real "fix" for this. Just say we can't do it …
00:14 Ticket #6 (blown assert on hydrogen populations for dense photoionized medium) closed by Ryan Porter
fixed: Line 439 of hydrolevel.cpp was changed from …

2006-12-21:

23:51 Ticket #6 (blown assert on hydrogen populations for dense photoionized medium) created by Ryan Porter
The assert at line 812 of hydrolevel.cpp is blown for hydrogen with …
23:00 CloudyPapers created by whenney@…
initial edit
22:56 WikiStart edited by whenney@…
Link to new page (diff)
22:50 WikiStart edited by anonymous
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22:49 WikiStart edited by anonymous
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14:47 Changeset [741] by rjrw
Correct headers in "punch chemistry co rates" output pdr_leiden_f1 …
03:44 Ticket #5 (XC has overflow at line 243 of cont_gaunt.cpp) created by rporter@…
Any model, just run test. Compiled with pretty much anything. For …
03:40 Ticket #4 (NaN in ion_solver) created by rporter@…
The below input will blow an assert in iso_continuum_lower, but this …
01:27 Ticket #3 (missing carriage return in cdPrintCommands output) created by rporter@…
For some reason when the below model crashes (a separate issue which I …

2006-12-20:

23:58 Ticket #2 (assert thrown) closed by rporter@…
fixed: Problem was a failure for the continuum lowering routine to allow for …
01:08 Changeset [740] by Gary J. Ferland
there changes were introduced by Ryan Porter *.h are change of …

2006-12-19:

23:32 Changeset [739] by rjrw
Merged from trunk r730:738
19:29 Ticket #2 (assert thrown) created by Gary J. Ferland
Ryan found that the following throws an assert in phi(h) 18.000000 …
18:46 Ticket #1 (crash due to intense continuum) created by Gary J. Ferland
Ryan Porter reported this bug this can crash for two very different …

2006-12-18:

23:39 Changeset [738] by rjrw
Move all standard reaction data to files.
23:34 Changeset [737] by rjrw
...and a few more (expressions converted to pure numbers)
23:13 Changeset [736] by rjrw
Fix some slight format errors in base CO network data
22:37 Changeset [735] by rjrw
Data files containing base CO network reactions
22:22 Changeset [734] by rjrw
Correct some comments in mole_co_reactions.cpp. Step towards reading …
21:56 Changeset [733] by Gary J. Ferland
atmdat_2photon.cpp - introduced error in previous rev - logical flag …
21:09 Changeset [732] by Gary J. Ferland
change int used for logical vars to bool make all vars with names …
20:22 Changeset [731] by rjrw
Merged from trunk r707:730
18:19 Changeset [730] by rjrw
Correct initial value of lgFirstCall in atmdat_2photon.cpp

2006-12-17:

19:13 Changeset [729] by Gary J. Ferland
small changes in formatting, no significant changes

2006-12-16:

19:39 Changeset [728] by peter
No code change; only lots of cosmetic changes to correct the layout …
19:08 Changeset [727] by peter
Merging changes from mainline upto r726.
18:17 Changeset [726] by peter
Merging changes from mainline upto r725.

2006-12-15:

17:31 Changeset [725] by rjrw
Change to string specification of reaction rates, so can be converted …
17:23 Changeset [724] by peter
source/cddefines.h: source/cdinit.cpp: - Add support for PathScale?
01:03 Changeset [723] by rjrw
Flags to signal udfa state of the reaction.
00:56 Changeset [722] by rjrw
Resolve bug in reactions for pdr_leiden_hack_f1.in

2006-12-14:

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19:47 Changeset [721] by rjrw
Compare rate data with UDFA database if flag is set in …
19:38 Changeset [720] by rjrw
Parsing and verifying against UDFA database for reactions with #define …
18:57 Changeset [719] by rjrw
Add the udfa chemical data rates.
15:42 Changeset [718] by rjrw
Sort reactant list for clarity in output; sort function will be useful …
09:07 Changeset [717] by rjrw
Switch of H2* entirely if hack applied Sort molecule list (and …

2006-12-13:

22:07 Changeset [716] by rjrw
Include option to plot pbm sparseness pattern for CO network -- at the …
17:15 Changeset [715] by Gary J. Ferland
Set new date.
17:07 Changeset [714] by Gary J. Ferland
parse_compile.cpp - two commands, compile stars and compile grains, …
17:07 Changeset [713] by Gary J. Ferland
these are small changes to improve formatting, remove unnecessary …
07:49 Changeset [712] by rjrw
Move to generic trapped MALLOC Eliminate some globals from the CO …
00:11 Changeset [711] by rjrw
Eliminated BadMalloc? now MALLOC dies rather than returning on failure.

2006-12-12:

22:15 Changeset [710] by rjrw
Merged in small changes from newmole r704:708
22:07 Changeset [709] by rjrw
Make sure malloc and calloc are caught when NDEBUG is set -- memory …
21:44 Changeset [708] by rjrw
Merged changes r691:707 from mainline Small modifications to …
02:40 Changeset [707] by peter
source/cddefines.h: Corrected comment.
02:18 Changeset [706] by peter
source/cddefines.h: - Modify condition for using standard malloc and …

2006-12-09:

12:52 Changeset [705] by Gary J. Ferland
0.05 decrease in column density of H3+. this had been true of newmole …

2006-12-08:

23:22 Changeset [704] by peter
Merging newmole branch to the mainline.
22:33 Changeset [703] by peter
source/parse_drive.cpp: Replaced with copy from mainline. Same …
15:59 Changeset [702] by peter
source/input.cpp: This file was previously added to newmole branch …
15:43 Changeset [701] by peter
Merge changes from mainline upto r700.
11:58 Changeset [700] by Gary J. Ferland
passes vs, pgcc, sdx, some purify slow sims run cleanly
11:58 Changeset [699] by Gary J. Ferland
oversight - this sim had not been updated in previous commit
02:52 Changeset [698] by Gary J. Ferland
add pragma to disable warning due to unused var in vs2005

2006-12-07:

23:44 Changeset [697] by Gary J. Ferland
these are the changes in the slow test suite that resulted from the …
23:27 Changeset [696] by peter
Merged fix in r695 from mainline.
23:24 Changeset [695] by peter
source/cdinit.cpp: Remove duplicate prototype definitions.
22:28 Changeset [694] by rjrw
Fix further vs2005 type warning…
21:18 Changeset [693] by rjrw
Catch MALLOC failures.
21:08 Changeset [692] by Gary J. Ferland
merge changes in mainline between r688 and 691
20:55 Changeset [691] by Gary J. Ferland
these are various small changes that have occurred, also Ryan Porter's …
20:46 Changeset [690] by rjrw
Eliminate ipR_xxx variables. The reaction list now has adaptive length.
19:08 Changeset [689] by rjrw
Switches off grain mantle species when not needed. Privatization of …

2006-12-06:

03:53 Changeset [688] by peter
Merge changes from mainline upto r685 (second installment). Mop up a …
03:35 Changeset [687] by peter
Merge changes from mainline upto r685. This branch is now fully …
03:33 Changeset [686] by Gary J. Ferland
hash.cpp - remove cases of return after call to cdEXIT - cdEXIT does …
00:14 Changeset [685] by Gary J. Ferland
dayslow_master.pl - use icl rather than gcc for slow test suite …

2006-12-05:

19:55 Changeset [684] by rjrw
Patch back to deal with SEGVs on previous step. Still need to a) …
19:53 Changeset [683] by peter
tsuite/auto/run_parallel.pl: Fix some problems in the script: - …
19:33 Changeset [682] by peter
source/atmdat_adfa.cpp: Promote ADfA.CF to double precision.
17:17 Changeset [681] by peter
The main purpose of this commit is to split off the atomic data from …
08:05 Changeset [680] by rjrw
Switch off grain mantle species entirely when NO GRAIN MOLECULES.

2006-12-04:

23:21 Changeset [679] by rjrw
Small tidyings to restrict scope of some more parts of the CO network.
18:51 Changeset [678] by rjrw
Last change might break everything else, though, so roll back the use …
18:32 Changeset [677] by rjrw
Fix limit_eden.in problem. The coupling of the molecular solver to …
03:28 Changeset [676] by Gary J. Ferland
helike_level.cpp - bugfix - trace threw fpe in limit_eden.in in print …
00:03 Changeset [675] by rjrw
Correct bug in UMISTrates hack. Also regularize tabbing in hash.cpp, …

2006-12-03:

05:13 Changeset [674] by peter
source/cont_gaunt.cpp: Remove three more places where z.real() was …
03:35 Changeset [673] by peter
source/grains_mie.cpp: source/cont_gaunt.cpp: source/thirdparty.cpp: …
01:47 Changeset [672] by peter
source/cddefines.h: source/grains_mie.cpp: source/cont_gaunt.cpp: …

2006-12-02:

12:51 Changeset [671] by Gary J. Ferland
no botches but these three were fairly close. test suite run cleanly
03:31 Changeset [670] by Gary J. Ferland
parse_commands.cpp - updated line intensities asserted in smoke test - …
03:27 Changeset [669] by Gary J. Ferland
futher update of sims that changed due to Badnell DR

2006-12-01:

17:04 Changeset [668] by peter
tsuite/auto/stars_optimize1.in: tsuite/auto/stars_optimize2.in: …
03:18 Changeset [667] by Gary J. Ferland
continue updating changed results as consequence of using Badnell DR rates

2006-11-30:

23:44 Changeset [666] by rjrw
Change implementation of POW2/POW3 Tidy up some warning messages.
22:56 Changeset [665] by rjrw
Mop up a few more warnings which cascaded from the last fix…
22:54 Changeset [664] by Gary J. Ferland
remove redundant header files in hash.cpp
22:48 Changeset [663] by Gary J. Ferland
merge of r662 from newmole, ambiguous overload
22:34 Changeset [662] by Gary J. Ferland
vs2003 complained of ambiguous overload in two places, will also more …
20:16 Changeset [661] by rjrw
Catch more (but not all) VS warnings.
19:43 Changeset [660] by rjrw
Fix purify bug.
19:10 Changeset [659] by rjrw
Tidy up remaining bugs and almost all VS warnings in the mainline …
17:46 Changeset [658] by Gary J. Ferland
merge change in logic for adding ice formation on grains - do this …
17:24 Changeset [657] by Gary J. Ferland
merge revisions between head and 645 inclusive
16:56 Changeset [656] by Gary J. Ferland
head_punch.cpp - BUGFIX - fractional heating was evaluated as a double …
12:30 Changeset [655] by Gary J. Ferland
updating predicted results after Badnell DR enabled
03:33 Changeset [654] by Gary J. Ferland
dynamics.cpp - comment within comment fixed *.in - further updates of …
00:24 Changeset [653] by Gary J. Ferland
these are the changed input scripts, due to the use of Badnell DR …
00:23 Changeset [652] by Gary J. Ferland
the big change below is enabling the Badnell DR rates. a good …

2006-11-29:

22:52 Changeset [651] by rjrw
COmole_rate[], ipR_ now only accessed in mole_h_step.cpp and …
22:12 Changeset [650] by rjrw
Re-checked diffs with trunk; merged changes so should now agree at r649.
18:07 Changeset [649] by rjrw
Use NULL rather than 'dummy' for string argument that shouldn't be …
12:10 Changeset [648] by peter
source/punch_do.cpp: source/dynamics.h: source/hash.cpp: …
07:33 Changeset [647] by rjrw
Updated comments to describe current process for addition of CO …
03:19 Changeset [646] by Gary J. Ferland
cddrive.cpp give units of column density for comment for cdColm …
01:59 Changeset [645] by Gary J. Ferland
forgot to add punch_colden.cpp to handle some option on punch column …
01:53 Changeset [644] by Gary J. Ferland
add terminal option to punch wind command add some option to punch …
00:33 Changeset [643] by Gary J. Ferland
commit the renames in the UTA data files that were done in r 635 - 638

2006-11-28:

23:25 Changeset [642] by rjrw
Merge with trunk changes r565:638
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