Timeline



2012-12-21:

20:53 Changeset [7033] by rjrw
Convert column density calculation of remaining H2 species
19:14 Changeset [7032] by rjrw
Convert 2 more column densities
18:52 Changeset [7031] by rjrw
Move another column density over to using the molecular network version
16:32 Changeset [7030] by rjrw
Get more column densities direct from the chemical network
16:03 Changeset [7029] by rjrw
Allow monitoring of column densities of (short) chemical species
13:40 Changeset [7028] by Gary J. Ferland
val to mean several platforms
12:50 WikiStart edited by Gary J. Ferland
remove redundant phrase (diff)
12:48 WikiStart edited by Gary J. Ferland
give link to what is new in next version (diff)
12:44 Changeset [7027] by rjrw
Avoid copying into wavelength array unless needed for sort
12:17 Changeset [7026] by rjrw
Avoid some additional trivial uses of chALab, some minor changes for …
12:02 Changeset [7025] by rjrw
Remove some further direct uses of chALab
11:40 Changeset [7024] by rjrw
Start to use indirect queries on LinSv::chALab

2012-12-20:

21:05 Changeset [7023] by rjrw
Define some routines to enable raising level of abstraction in line …
17:20 Changeset [7022] by rjrw
Change some names to make interface seem clearer
17:20 Changeset [7021] by rjrw
Only pass in line type to print once over
17:20 Changeset [7020] by rjrw
Redirect printout to flush function, make format consistent
17:20 Changeset [7019] by rjrw
Break apart Flush function
17:20 Changeset [7018] by rjrw
Break out "Start" function into separate method
17:20 Changeset [7017] by rjrw
Start to refactor SaveResults1Line
17:20 Changeset [7016] by rjrw
Thread through new blend creation method
17:19 Changeset [7015] by rjrw
Store TransitionProxy? in SaveLine? structures
17:19 Changeset [7014] by rjrw
Separate routine for accumulating sums
17:19 Changeset [7013] by rjrw
Remove argument from SumLineZero?, as always used in pairs
15:41 Changeset [7012] by rjrw
...and Hjerting
15:31 Changeset [7011] by rjrw
Add Wells reference to bibliography database
14:25 Changeset [7010] by rjrw
Fix some mergeinfo data
14:23 Changeset [7009] by rjrw
Remove unhelpful mergeinfo
14:17 Changeset [7008] by rjrw
svn merge -c 7007 /trunk
14:07 Changeset [7007] by rjrw
BUGFIX: need to remove calls to GetLineRec? which will artificially …

2012-12-19:

18:06 Changeset [7006] by Gary J. Ferland
svn merge /trunk --- Merging r7002 through r7005 into '.':
17:50 Changeset [7005] by rjrw
Include H2 lines in validity test on size of line stack
17:36 Changeset [7004] by rjrw
Fix size of objects in array sort
17:27 Changeset [7003] by rjrw
Avoid dangerous/confusing static external value
14:14 Changeset [7002] by Gary J. Ferland
svn merge /trunk --- Merging r6942 through r7001 into '.':
13:56 Changeset [7001] by rjrw
Implement line composites
11:53 Changeset [7000] by rjrw
Embed one global in another, without which it doesn't make sense
11:37 Changeset [6999] by rjrw
Use vector<> not MALLOC to avoid mem leak from embedded early return
11:30 Changeset [6998] by rjrw
Remove global, used indexed sort rather than copying full structures
11:14 Changeset [6997] by rjrw
Move findline into LineSave? class, more DRY

2012-12-18:

20:19 Changeset [6996] by Gary J. Ferland
svn merge /trunk --- Merging r6976 through r6995 into '.':
13:36 Changeset [6995] by rjrw
Move initialization of line stack elements into class
13:03 Changeset [6994] by rjrw
Encapsulate remaining members of LineSv?
13:02 Changeset [6993] by Gary J. Ferland
the Fe III data in stout format
13:01 Changeset [6992] by Gary J. Ferland
move Fe III from chianti to stout rm Kurucz Chianti masterlist files …
12:08 Changeset [6991] by rjrw
Encapsulate a couple more LinSv? fields
11:59 Changeset [6990] by Gary J. Ferland
clean up low stages of ionization of Fe
11:42 Changeset [6989] by rjrw
Encapsulate emslin member
11:26 Changeset [6988] by rjrw
Start to encapsulate LineSv? actions, to enable blend handling
10:44 Changeset [6987] by rjrw
Start on refactoring towards handling of blends

2012-12-17:

23:35 Changeset [6986] by Gary J. Ferland
embarrassing spelling error
23:28 Changeset [6985] by Gary J. Ferland
minor formatting tweek
22:59 Changeset [6984] by Gary J. Ferland
retain state order info for possible printout
22:48 Changeset [6983] by Gary J. Ferland
prevent segfault when used with He off
22:47 Changeset [6982] by Gary J. Ferland
fix prints
22:18 Changeset [6981] by Gary J. Ferland
cross reference two recombination coef commands
17:28 Changeset [6980] by Gary J. Ferland
minor sorting of abundances commands
15:54 Changeset [6979] by Gary J. Ferland
remove redundant left over
11:09 Changeset [6978] by rjrw
Save zoning decisions for igm_z3

2012-12-16:

17:55 Changeset [6977] by Gary J. Ferland
merge r6976
16:06 Changeset [6976] by Gary J. Ferland
BUGFIX CX rates used not saved for ions trimmed out, exercise SAVE …
15:32 Ticket #251 (move block of cobalt blue translated BLOCK DATA into external file) created by Gary J. Ferland
perhaps the last large block of cobalt blue translated fortran BLOCK …

2012-12-15:

08:01 Changeset [6975] by rjrw
Renormalize a few more monitors

2012-12-14:

07:52 Changeset [6974] by rjrw
Re-apply r6964, with r6970 from trunk to deal with convergence …
07:50 Changeset [6973] by rjrw
Re-apply r6964, with r6970 from trunk to deal with convergence failures

2012-12-13:

23:27 Changeset [6972] by rjrw
svn merge /trunk
23:22 Changeset [6971] by rjrw
svn merge /trunk
23:16 Changeset [6970] by rjrw
Various convergence test tweaks
00:30 Changeset [6969] by rjrw
And then revert monitor changes accidentally included last time…
00:26 Changeset [6968] by rjrw
Revert r6964: completely hangs up grid_extreme 1,18 (didn't on the trunk)

2012-12-12:

22:35 Changeset [6967] by rjrw
Don't fuss with OH CX test in very neutral regions
21:02 Changeset [6966] by Gary J. Ferland
add test of high Z collisional equilibrium at 1e4K
20:58 Changeset [6965] by Gary J. Ferland
missing save monitor
19:55 Changeset [6964] by rjrw
CX to ground state svn merge -c 6944 /trunk svn merge -r 6947:6952 …
19:41 Changeset [6963] by rjrw
Test suite updates for CX changes
15:37 Changeset [6962] by wangye0206
merge to version 6961
01:08 DevelopingWithDlx edited by Gary J. Ferland
Ryan says gcc mpi works on dlx (diff)
00:08 Changeset [6961] by Gary J. Ferland
add line ratios

2012-12-11:

23:59 Changeset [6960] by rjrw
svn merge /trunk
21:53 Ticket #250 (charge exchange raises H O ionization of high Z gas) closed by rjrw
fixed: The problem was due to overpopulation of high levels by …
21:44 Changeset [6959] by rjrw
Mark transitions active soon enough to ensure consistent zoning …
21:36 Changeset [6958] by marios
Incorporate indirect excitations of iso-sequences
21:18 Changeset [6957] by rjrw
svn merge /trunk
21:12 Changeset [6956] by rjrw
Prevent trimming of singly-ionized states in ion_solver
03:35 Changeset [6955] by Gary J. Ferland
add low den test

2012-12-10:

18:41 Changeset [6954] by rjrw
svn merge /trunk
18:16 Changeset [6953] by rjrw
CX from ground level in neutral iso-sequences
18:12 DownloadLinks edited by Gary J. Ferland
first link is http browse, add git for rc1 (diff)
18:03 WikiStart edited by Gary J. Ferland
direct link to download links page (diff)
14:04 Changeset [6952] by rjrw
Sum CX sources and sinks separately, to allow separate addition
12:47 Changeset [6951] by rjrw
Some simplifications enabled by the previous commits
12:18 Changeset [6950] by rjrw
Convert CharExcRecTo/CharExcIonOf? to vector form
11:40 Changeset [6949] by rjrw
Bugfix: update ExtraLymanLines? opacities
11:26 Changeset [6948] by rjrw
Change explicit H/He CX totals to nelem indexed vectors
03:05 Changeset [6947] by Gary J. Ferland
finished with this version of stout
03:03 Changeset [6946] by Gary J. Ferland
accept energy files that are not in sorted order allow line strength …
02:33 Changeset [6945] by Gary J. Ferland
svn merge /trunk --- Merging r6935 through r6944 into '.':

2012-12-09:

23:06 DevelopingWithDlx edited by Gary J. Ferland
correct comment about max make -j xx (diff)
23:04 DevelopingWithDlx edited by Gary J. Ferland
number of cores we can use on login node (diff)
22:16 Changeset [6944] by rjrw
Check on consistency of one major CX reaction in conv_base loop
20:58 DevelopingWithDlx edited by Gary J. Ferland
fix error (diff)
20:50 DevelopingWithDlx edited by Gary J. Ferland
run n-way mpi job (diff)
20:46 DevelopingWithDlx edited by Gary J. Ferland
rm srun (diff)
17:10 Changeset [6943] by Gary J. Ferland
incorrect printf
17:08 Changeset [6942] by Gary J. Ferland
svn merge /trunk --- Merging r6875 through r6941 into '.':
14:02 Changeset [6941] by Gary J. Ferland
define flag indicating explicit request for an element to be off, do …

2012-12-08:

22:14 Changeset [6940] by Gary J. Ferland
updates
21:42 Changeset [6939] by Gary J. Ferland
Matt add line strengths, do not count numb temps
21:03 Changeset [6938] by Gary J. Ferland
s 2
15:58 StoutData edited by matt
(diff)

2012-12-07:

19:35 Ticket #250 (charge exchange raises H O ionization of high Z gas) created by Gary J. Ferland
four sims are attached. Only H and O are included, and it is a …
15:37 Changeset [6937] by Gary J. Ferland
clean up tailing spaces
15:33 Changeset [6936] by Gary J. Ferland
rm debug print in comment
15:26 StoutData edited by Gary J. Ferland
say that transition probabilities are cumulative (diff)
15:08 Changeset [6935] by Gary J. Ferland
svn merge /trunk --- Merging r6885 through r6899 into '.':
15:02 Changeset [6934] by peter
source/cddrive.cpp: - Bug-fix: revert change in behavior of the NO …
15:01 Changeset [6933] by Gary J. Ferland
fix typo
14:42 Ticket #249 (coupled escape probabilities - gives implementation details) created by Gary J. Ferland
[…]
07:38 Changeset [6932] by rjrw
Update ExtraLymanLines? escape at least once per zone…

2012-12-06:

23:51 Changeset [6931] by rjrw
Break apart different physics elements of RT_line_all
23:27 Changeset [6930] by rjrw
Continue factoring apart line escape and fine opacity updates
22:36 Changeset [6929] by rjrw
Factor logic out of fine opacity update
22:25 Changeset [6928] by rjrw
Dependency inversion on RT_line_all
17:55 Changeset [6927] by Gary J. Ferland
add transmitted file
17:33 Changeset [6926] by Gary J. Ferland
define SolarSave? so can be used to generate scaled abundances
02:39 Changeset [6925] by Gary J. Ferland
Will Henney's Trapezium Cluster with brems
00:19 Changeset [6924] by rjrw
Provide DopplerWidth? data for diatomics

2012-12-05:

21:14 Changeset [6923] by rjrw
Comment out RT_pump_all which causes problems with blr_n09_p18.in, …
18:30 Changeset [6922] by Ryan Porter
branches/h2star - merge from trunk r6859:6921
17:26 Changeset [6921] by Ryan Porter
trunk/source - improve Integrator class using explicit initialization …

2012-12-04:

21:10 Changeset [6920] by wangye0206
merge of r6871 through r6919
16:57 Changeset [6919] by peter
Merge r6917-6918 from mainline: optimize append_file() for better …
16:52 Changeset [6918] by peter
source/mpi_utilities.cpp: - Fix explicit constant.
16:45 Changeset [6917] by peter
source/mpi_utilities.cpp: - Optimize append_file() for speed so that …
07:59 Changeset [6916] by rjrw
Only test for optical depth of transitions where the optical depth is …

2012-12-03:

22:35 Changeset [6915] by rjrw
svn merge /trunk
22:05 Changeset [6914] by rjrw
svn merge /trunk
22:03 Changeset [6913] by rjrw
Add thin model test case
21:52 Changeset [6912] by rjrw
Consistent effective opacities
15:25 Changeset [6911] by Gary J. Ferland
update references
07:38 Changeset [6910] by rjrw
Broader line optical depth constraint, more useful diagnostics
06:02 Changeset [6909] by rjrw
Access species via qList rather than a transition-specific level
05:43 Changeset [6908] by rjrw
Each qList has a single species
05:34 Changeset [6907] by rjrw
Cache DopplerWidth? for each species

2012-12-02:

22:44 Changeset [6906] by rjrw
Remove some more explicit calls to GetDopplerWidth?
22:29 Changeset [6905] by rjrw
Remove DopplerWidth? argument from RT routines
22:22 Changeset [6904] by rjrw
Start to pull atomic weights out of species component
17:07 StoutData edited by matt
(diff)
02:37 Changeset [6903] by Gary J. Ferland
svn merge -r6899:6900 /trunk --- Merging r6900 into '.':
02:35 Changeset [6902] by Gary J. Ferland
svn merge -r6899:6900 /trunk --- Merging r6900 into '.':
02:31 Changeset [6901] by Gary J. Ferland
number of temperature points
02:27 Changeset [6900] by Gary J. Ferland
incorrect id
02:15 Changeset [6899] by Gary J. Ferland
Romas fix formatting

2012-12-01:

23:02 Changeset [6898] by rjrw
A transition should know its Doppler width (but need to catch edge …
20:13 Changeset [6897] by rjrw
Update iso_sources at start of equilibrium loop Test line optical …
17:12 Changeset [6896] by rjrw
svn merge /trunk
13:59 Changeset [6895] by rjrw
Use zone optical depths for zone width control
13:56 Changeset [6894] by rjrw
Create branch to save work to fix one-zone radius.drad issues

2012-11-28:

22:07 Changeset [6893] by rjrw
Make HII/HI radius stepping logic symmetric
21:28 Changeset [6892] by marios
in CoolEvaluate?(): added debug loop for printing indirect excitation rates
21:18 Changeset [6891] by marios
merge from trunk r6874:r6890
20:10 Changeset [6890] by Gary J. Ferland
used wrong comment character
20:09 Changeset [6889] by Gary J. Ferland
follow stout name convention
18:55 Changeset [6888] by rjrw
Fix bad records from ADS
14:42 Changeset [6887] by Gary J. Ferland
couple of missing books

2012-11-27:

13:40 AtomicMolecularData edited by Gary J. Ferland
second link to StoutData page - there are two pages, the original … (diff)
13:38 AtomicMolecularData edited by Gary J. Ferland
use StoutData link (diff)
13:37 StoutData edited by Gary J. Ferland
energy data are experimental, do not need to be in increasing order (diff)
13:34 StoutData edited by Gary J. Ferland
add two return links to bottom of page (diff)
13:32 Stout edited by Gary J. Ferland
(diff)
13:31 StoutData created by Gary J. Ferland
page obeying camel case
13:31 DeveloperPages edited by Gary J. Ferland
use camel case for StoutData page (diff)
12:28 Changeset [6886] by Gary J. Ferland
S ii data with line strengths rather than transition probabilities, …
12:15 Changeset [6885] by Gary J. Ferland
enhance data parsing to include incorrect energy ordering, accept line …

2012-11-26:

22:13 Stout edited by Gary J. Ferland
state information is optional 4th number on energy file (diff)
22:04 AtomicMolecularData edited by Gary J. Ferland
link to stout format (diff)

2012-11-25:

17:09 Changeset [6884] by rjrw
--oneline seems to slow things up slightly
16:48 Changeset [6883] by rjrw
Add oneliner to measure code volatility

2012-11-24:

17:31 Changeset [6882] by rjrw
Convert macro to const bool, switch logic to make use more …
15:27 Changeset [6881] by rjrw
Minor improvements to format of two paper titles
14:13 Changeset [6880] by Gary J. Ferland
r6879 from trunk
13:54 Changeset [6879] by Gary J. Ferland
cross reference save ionization means, save average ionization. These …

2012-11-23:

20:44 DevelopingWithDlx edited by Gary J. Ferland
document scratch disk (diff)
15:40 Changeset [6878] by Gary J. Ferland
obey case rules
15:34 Changeset [6877] by Gary J. Ferland
obey case rules

2012-11-22:

16:50 Changeset [6876] by Gary J. Ferland
silence warning with gcc 4.4
15:03 Changeset [6875] by Gary J. Ferland
merge from trunk

2012-11-21:

04:51 Changeset [6874] by marios
r6873 incomplete; merge from /trunk
03:03 Changeset [6873] by marios
Improvement over r6863: total excitation rates now computed for …
00:16 Changeset [6872] by Gary J. Ferland
g-bar for forbidden dbase lines, see r6868, ticket #248
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